mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGAGGGAGGTGGGGTGGGCAT GCCAACCATTTCCCTCTAT GCGGCGTTCTAGAGGACACTACTGCCAACCATTTCCCTCTATTTCCTCAGACCGCGCATGACGGATTTTCTTTTTTGCTTTCTGTGAGGGAGGTGGGGTGGGCATTGTTTATGTTGAATGTTTATATTTTTTTC GCGGCGTTCTAGAGGACACTACTGCCAACCATTTCCCTCTATTTCCTCAGACCGCGCATGACGGATTTTCTTTTTTGCTTTCTGTGAGGGAGGTGGGGTGGGCATTGTTTATGTTGAATGTTTATATTTTTTTCTGCATGATACATTTCATTTTGTGAAATCTTTAGAGAACTTCCTACCGTATGAGTTAGAAAATTAAATATTTGAAACTTGGCTTGG 4 2 3' arm Mus_musculus mirnest 100 100 -36.6 ..(((((((....(((((....((((..(((((((((((........((((....(((.((.(((...))).)).)))..)))).)))))))))))....)))).))))).....)))))))............ (-36.6)