mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCTCCTCTGGAGCCAGGGA TGAGGGCCCGGAGGACAGGTG AACTGCGCACTGCTGAGGGCTCTGAGGGCCCGGAGGACAGGTGATCTGTGGGGGCTACTGTGGAGTTGACTTTAGTGAGCAGCCTCTCCTCTGGAGCCAGGGAGCCCTAGAGCAGAGCTGGG AGACCATATCGTTTTCTGCTCTGGGGAGGCATGGGCTGCCTCCCTCTCCAGAGCCTCCATCCCCAGCCTGCATCTGAACTGCGCACTGCTGAGGGCTCTGAGGGCCCGGAGGACAGGTGATCTGTGGGGGCTACTGTGGAGTTGACTTTAGTGAGCAGCCTCTCCTCTGGAGCCAGGGAGCCCTAGAGCAGAGCTGGGGCCGGCTCTCGGGCTTCCCTAGGAAATGCGCGCCATCAGGGGCCTGCTGAGATCCATGAAGTTTCCCTACTGGAGGAGGAAGCCCACTGGCGGCACAGGAAGGCTGTCTGTCAGAGCTCTCACCAAGAGTCGAGGTTGTGCCTGAAGCTCAGTGCGAAGTCTGAAATATGCAACAGAGGAAATATATCTCTATCTCTCC 3 2 3' arm Mus_musculus mirnest 100 100 -54.5 ..(((.((.(((((.((((((((...(((((((((((.((((..((..(((((...(((....)))...)))))..))...)))).)))))))).)))..))))))))..))))).))))). (-54.5)