mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTACTCTCTCCGTCCCAAAATAAA TATTTTGGGACGGAGGGAGTAGAT GTCATCTACTCTCTCCGTCCCAAAATAAACCAACCTCGTACTAGGAAGTGTCATATACTAGTACGGGATTGACTTATTTTGGGACGGAGGGAGTAGATAAC 1 0 5' arm Oryza_sativa pmrd MIR1122 6e-49 osa-MIR1862c 2e-45 -60.22 ...(((((((((((((((((((((((((..(((.((((((((((.............)))))))))).)))..)))))))))))))))))))))))))... (-60.22)