mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTTCTCCACCTCGATCCTCGG GAGGAGGGTGGAGAGGAC CCACGCTCAGCTTCTCCACCTCGATCCTCGGCGGGCTCGCCATAGCCCGAGCTTCAAGCGCCGCTGCTGCCGCCGCCGCCGCCGAGGAGGGTGGAGAGGACGAGGAGG 0 3 5' arm Oryza_sativa pmrd 100 100 -57.8 ((.(.(((..(((((((((((...(((((((((((((((........))))).....((((.((....)).).)))..)))))))))))))))))))))..)))).)) (-57.80)