mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAAGCTGCCAGGAAGTTCCGGAC CCGGAAGTTCCGGGCAGCTTTCT GGAAGAACTCCGGAAGTTCCGGGCAGCTTTCTCTGCTTGTGAGAAAAAGCTGCCAGGAAGTTCCGGACCTTTTGCC 4 0 3' arm Oryza_sativa pmrd 100 100 -40.2 ((((((..(((((((.((((.((((((((((((.......))))..)))))))).)))).)))))))..)))).)) (-40.20)