mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGCCTCCGCGGGGTTGAAGC TTCAACCTTAAGTGGGTCTCAGG CATCACCACACGACTCGGTTTTGGCCTCCGCGGGGTTGAAGCTGCTAGAGACGCTTCAACCTTAAGTGGGTCTCAGGGAGAGAGGAGTGGCGCCG GAGAGTCGTGAAACTCCATCACCACACGACTCGGTTTTGGCCTCCGCGGGGTTGAAGCTGCTAGAGACGCTTCAACCTTAAGTGGGTCTCAGGGAGAGAGGAGTGGCGCCGCGGCGGAGCGCTCCCTCTCCGCGGCTGTGGGGATTCCTGCCGCGGCCTGGGCGGCGGCGGCCGCTCCGCGTCTCCTCGTCGCTGCAGCGCGCGGGGCGGATCCGCCATATTGGAGCCGGGGCTGCAGGTTCCGTGCGGCGGCGGCGGCGAGAGGCGGGCCTGGCAGCGGGGCCCGCGCGGCAGCGGCGGACGCGGGGGAACGCATGAGCCGCCGCGGCTAGCCTCTTCCCCGCCCACCGCCTGCGCTGGGTCGTCGGGACCCGGCCGGGAGGGGCCGCGGCGGCCGCAGGATGTTCTCTAAGAAGCCTCACGGCGACGTGAAGAAGTCCACCCCAGATGGGCTGGGCTCCAAGAATGACGCGCTGACCCGCCTCAAGCCCTTGCGCTTTGCCTCGGGACTGCGAATTTATTGCCCTTACCGGTTTTTTGCCAACATTTTCCCTTTTTACTATGTGTTCTGTGAAAATTTGCGACTTTTGAAGCCTCGCTTTACCTGAAGGTCCCATTTTCCATGAGAGGAATGAAAGCCTTCATTATATATTATAGAAATAAAAA 2 2 5' arm Mus_musculus mirnest 100 rno-mir-3593 1e-31 -31.6 ........(((..(((..((((((..((((((((((((((((..........)))))))))))..)))))..))))))...)))..)))...... (-31.6)