mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACAGTACTGTGATAACTGA AGTTATCACAGTGCTGATGCT GACTGACAGGCTGCCCTGGCTCAGTTATCACAGTGCTGATGCTGTCCATTCTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCATCTTGC GTCTTTACTGCTTCACCCTCATCAAATGACCTCTTTTCTTCTGCTTTTTGCCTCCATCCAGAAGTGCATCTTTCAGTCCTTCACTCCGAGGGGCACCTTCGAAGGGGGTGACGTCACTGACGGACACGGTGACTGACAGGCTGCCCTGGCTCAGTTATCACAGTGCTGATGCTGTCCATTCTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCATCTTGCCTTCCTCCCGAGAAGTCTCATCACAGCATGCGAAAGGCATGGGAAGCAGGACACCGGGACAGGACCAGACACACTTCACACCGCTCCTGTGTTCACCACTCTTCCAGGCTCCATTTGGTAACAAGGAGCAAAACAATGTAGCAGCTTGCACAGGGTATGAAGACGGTTATGCTGAGGACAAACAGGGTCTGTGGAACCTTTCATGTCTGGGAAGATTGACACTAAGAAAGTCCTAAGGACAAATCAACATATCTCAGACGGAGAGAAACGATCCATTCTATAAACA 0 1 3' arm Mus_musculus mirnest mir-101 1e-28 mmu-mir-101a 7e-42 -43 ........(((((((((...((((((((((((((((((.((((............)))))))))))))))))))))).))..)))))))....... (-43)