mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTACAGTACTGTGACAACTGA AGTTATCACAGTGCTGATGCTG GACTGACAGGCTGCCCTGGCTCAGTTATCACAGTGCTGATGCTGTCCATTCCAAAGGTACAGTACTGTGACAACTGAAGGATGGCAGCCATCTTGC CGGCCGCTGGAAATAGAGCCGGGATGTTGTTTACATGACGGATCCGGCGGGAGGAGTCTGCGAGGAGGAGGCGGAGAGAGGAAGAGCGGAGTCCCCGCGGCGGCGGTGGCGGGCCGGGGTGCGGGCGAGCGCCGCGCGGTCCCCGAAGCCTGGACACGGGAGCCTAGGAAGTGCATCTTTCAGTCCTTCACTCCGAGGGGCACCTTCGAAGGGGGTGACGTCACTGACGGACACGGTGACTGACAGGCTGCCCTGGCTCAGTTATCACAGTGCTGATGCTGTCCATTCCAAAGGTACAGTACTGTGACAACTGAAGGATGGCAGCCATCTTGCCTTCCTCCCGAGAAGTCTCATCACAGCAGGCTAAAGGCATGGGAAGCAGGACACCGGGACAGGACCAGACACACTTCAAACCGCTCCTGTGTTCACCACTCTTCCAGGCTCCA 1 1 3' arm Mus_musculus mirnest mir-101 7e-24 mmu-mir-101a 4e-37 -40.2 ........(((((((((...((((((.(((((((((((.((((............))))))))))))))).)))))).))..)))))))....... (-40.2)