mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCAGTTTTCCCAGGAATCCCT GGATTCCTGGAAATACTGTTC CTCCCACCTTGTCCTCACGGTCCAGTTTTCCCAGGAATCCCTTGGATGCTAAGATGGGGATTCCTGGAAATACTGTTCTTGAGGTCATGGCTTAGC ATTTCTAAGCGTCCATGGCATCGCTGCCTTCATGCTGGCTCCTCACCCACCCAGTGGGTCCTATTTGATGCCACTTTACAATCGTACGAGGATCAGAAGCCAAGTGACCTGCTGGAGGACCGCAGCGAGAAGGTCACTAGAGCCTGGGAACAGACTTTTAATAATCACTGGCCAGAGTCCCCGTGGACCATGGCGGGGGGAGGGAGGTAGGGAGGACTGGTCCCAAATGCTTCCTGACCTCAGGGAAGGTACTTTCCAAGCCACTCAAAGCTCTAGTTGCTCTTCCCAGAGCAGGACGCTGCATCCCGGGAAGGAGGGTGCATACAGCGCCCCACGGTGGATGCCGAGAGAACTGCTGGTCCCTAGGGGCGTGGCACGTGCTGAAGGCATCTCTCTCTCTCCCACCTTGTCCTCACGGTCCAGTTTTCCCAGGAATCCCTTGGATGCTAAGATGGGGATTCCTGGAAATACTGTTCTTGAGGTCATGGCTTAGCAGCTGGATCTGTCTCCCTCCCACCTGGCATTTCCTTCCGGGGAGTAGGGAGGAGGAGGCGGTTCGTCGGAGGTAAGCGGTCTTGGGAGCTCTCTTCTGACCTTGTATAGCTTTTCTTTCCGTCTGTCCATATTTCCTAACATCCCCAGGAGGGAGGCTGGATGTGGGAAGCTCAGAACTGCTCACTCTTGAGAAACTCATCTCAAGACACAGTGGTTGAAAACCAGACTATGAGACGGTCCCCCTCCATTGACCTCACATGCTTTCCTGTAGACTTGTGTTGAGGGGGGGGCCAGAC 3 0 5' arm Mus_musculus mirnest mir-145 8e-36 rno-mir-145 7e-45 -35.5 ......((.((.(((((.((..((((.((.((((((((((((.............)))))))))))).)).)))).)).))))).)).))...... (-35.5)