mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGCCGGGCAGTGGTGGCACAC GCGCCACCACCACCCCGCTTG AGGTAATAGGAGCCGGGCAGTGGTGGCACACACCTTCAATCCCAGCACTTGNGAGGCAGAGGCAGGCGGATTTCTGAGTGCTAGAATTAAAGGCGTGCGCCACCACCACCCCGCTTGCAGCTA AAGTGGGTTAAGAGAATGTTATGATGGAAGGAGAAGTGGTTAGAAGTGGTCTGGGAGGAGTTAGAGGGAAGACTCGAGGAGTGGGCATGACCAAAATACATGCAAAATTCCCAAATAACAAATTAGAAATGTTTTTCTGAAAAAAAGCTATTAAGAGAAGGTGTGTGTGTGTGTGATTTCTTCCTTTACTCTTTATCATTTTGTTGAGTTGAGTAAGAAACCTTCAGCAGTACATGAGGAGTGTGCCTAACTTGTCACCATACGCTAAGAGCTGACAGCAAGTGAAAGTCTGAATGAAGCATATGAGATATTACTTAGTACTTAGGGGGTGAAGAAACAAACACTTCAGGGCAAATAGAAAACAGTGTATGTTCGTGATTGGTCTACCATTGGAGTATACCCCAGTCCATATTTTTGATCAATTAAAAATAGGTAATAGGAGCCGGGCAGTGGTGGCACACACCTTCAATCCCAGCACTTGNGAGGCAGAGGCAGGCGGATTTCTGAGTGCTAGAATTAAAGGCGTGCGCCACCACCACCCCGCTTGCAGCTA 4 0 5' arm Mus_musculus mirnest Metazoa_SRP 0.00003 mmu-mir-1946a 2e-18 -44.5 .........((((.(((..((((((((.(((.((((.(((...((((((((.((.((........))...))..))))))))...))).)))).))).))))))))..))).))))....... (-44.5)