mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCCGGGCAGTGGTGGCACACC TGGGACCATTTCTGGGCTG CCCCCTTGTGGGTGGGACCATTTCTGGGCTGGTATTCTTGGGTTCTATAAGAAACCAAGCTGAGGCCGGGCAGTGGTGGCACACCCCTTTAATC GAGAAAGCCGCTTCAGTTGCAGAAATGCCTCCATCAGACCCAGCTTTAAGGCATTTTCTAAATTAGTGATCAAGGGGAAAAGCCCCCTTGTGGGTGGGACCATTTCTGGGCTGGTATTCTTGGGTTCTATAAGAAACCAAGCTGAGGCCGGGCAGTGGTGGCACACCCCTTTAATCCCACCACTTGGGAGGCAGAGGCAGGTGGGTTTCTGAGTTCAAGCCCAGCCTGTTTTACAGAGTGAGTTCCAGGACAGCCAGGGCTACAGAGAAACTCTTTCTTGAA 4 2 3' arm Mus_musculus mirnest 100 mmu-mir-3471-2 0.00000002 -29.5 .....(((.(((((..((((((.((.((((..((..(((((.((((...)))).))))).)).)))).)).))))))....)))))...))).. (-29.5)