mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CAGTTTGTCTCTTCTTTGTCT ACATAGAAAAGGCAGTCTGCA CACAACATCTAAATGAACAGTGACATAGAAAAGGCAGTCTGCATTTATTCTGGAGCTGCAGTTTGTCTCTTCTTTGTCTCTGTCAGTTGGTTTGCTCC AGTAGCAATGAAAATTTGTGGGTGGGTCCCCACAACCTGAGGAAATATATTAAAGGGTTGCAGCATTAGGAAGGTTGAGAACCACTGATTAAGATCATCTCAGGGTGACAGAAACCTATGTAGATTTCTTGTCATCACAACATCTAAATGAACAGTGACATAGAAAAGGCAGTCTGCATTTATTCTGGAGCTGCAGTTTGTCTCTTCTTTGTCTCTGTCAGTTGGTTTGCTCCAGTTGTGCCTATGGGATGCTTTGTAGTAGTCATTTCCTCATTTATCATCTCTAGTTGGTTGGGGGCATAGAATATATGTATCTTTGCAAGGTTCTATATGTTGATGCCTTCATCTTTTCATTTCTTTATTCCTATTTTCATGTGGTTCTGTTTCTCCATTGAATTGGGGGTGGGGAGGAAAAACATATCAAAGCTAGAATGCAACATGTCCAGCATCCAGTTCTCTCATTTTAG 4 0 3' arm Mus_musculus mirnest 100 mmu-mir-3112 3e-41 -31 .....((.((((.(((.(((.((((.((((.((((((.(((((.((.......)).))))).)))))).)))).)))).)))))).))))..)).... (-31)