mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGGGAACGTCGAGACTGGAGC ACCCGTCCCGTTCGTCCCCGGA CAGCCCCGGCCGCCGGGCGCACCCGTCCCGTTCGTCCCCGGACGTTGCTCTCTGCCCCGGGAACGTCGAGACTGGAGCGCCCGAACTGAGCCACC CCTCGTGCCGCGGGGAGCGCTCCCCTCTCGCCGCTTGCCTTGCCCGGCGCAGCCCCGGCCGCCGGGCGCACCCGTCCCGTTCGTCCCCGGACGTTGCTCTCTGCCCCGGGAACGTCGAGACTGGAGCGCCCGAACTGAGCCACCTTCGCGAACTCGGAGCGCGGCGGCCCGACTCAACCGCGGAGGCGCCCGGACGCGTAAAGTCAAGGCCTCAACCCGAAGGCAGCGCCTAAGAATCGCACTCCCTAGAATGCTCCAGCACTCACAGGGGCCTTCTCTGGGGTAACGGGACCCCAGCCGGATACTACAGCTCCAGCTGCTTGCGTCCCATGCATCGCCCTCTCGGGAGAGACCAGCTACCTAACTTTCTCTACCAGAGACCGCGCTGGCGTCTCGGGAGGGATGCTCTGCCCAGGGAGTCCCTCGGTCGCGGGACCTGTGGCCGCCAGAGCAGCTGGATCTGGAGTGTGCTGCCTGTGAACAGCCTGTGAAAGTGGCTCTTCTCCCTCTGGGTCAGAGGATGTCTCTGCTCTGGGGG 5 1 3' arm Mus_musculus mirnest 100 hsa-mir-1247 3e-44 -39.4 .......(((((.(((((((.((.(((.((..(((.(((((.....((.....)).))))).))).)).))).)).)))))))...)).)))... (-39.4)