mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGGGCCATCTCATCCAGATA AATGGATGCGATGGTTCCCAT GCTCTCTGCCTGCTCCTGTAAATGGATGCGATGGTTCCCATGCTGTTCTGAGGCAGAGCTAGGGCCATCTCATCCAGATACTGTGGAGATGGTACAA GGGGACTTGTGATTCTGGGTGGGTCCACTGATATGATCTCCAGATGTTCCCGCTAGGATGCACACTGAAGTTTTTAAATGATCCGAGCTCCGATCTTCTCAGGGTACCCATCTGCAGCACTGGAGTAGTCTAGTTCCAATCCCAGACTTGATGTGGACACTCTGACCACAGGAATGACTTGGAACCATTTGTGTGTGCCCTTTGTCTCCTGGCCACACCCAGAGGACACTCACAGCTCTAAGGAGTCACAGGGCCACGTGGATCTCCCACGTCCCTTCTGCTACCTTTTTGTCGTCGTCATCTGGCTCTCTGCCTGCTCCTGTAAATGGATGCGATGGTTCCCATGCTGTTCTGAGGCAGAGCTAGGGCCATCTCATCCAGATACTGTGGAGATGGTACAAGGCGCTTAGCACAAATGGGAAGAGGCTGCCCTGAGATGAGCTGCTAGGCTGCGTGAAGATGCTCAGAGGCTGGAAATGGGGGCTCCCAGGTCTGAATGGGTGGAACCAGGCCTGGATTTTAAACACACAGTCCTGGGTAGAGAAAGGAAATTGAAAAAGGCAACTATTTTGGAAATGACAAAGTAGACCT 5 0 3' arm Mus_musculus mirnest 100 mmu-mir-3109 8e-45 -36.1 .......(((..((((.(((..((((((.((((((((...((((.......))))......)))))))).))))))..)))...))))..))).... (-36.1)