mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGAATCTTGATGATGCTCCAC GCAGCATCATCAAGATTCTCA TATTGCCGATGCAGCATCATCAAGATTCTCACTTCCAAAGAACTTTGGCAGATGAACAGAAACAAAGAAAGATTTAACTCTTAACATCACCGGCCGTGCATTTGCATGTGAATCTTGATGATGCTCCACCCGCAAACAA 3 0 3' arm Populus_trichocarpa_x_Populus_deltoides pmrd mir-172 7e-74 ptc-MIR172b 4e-75 -43.4 ..((((.(.((.((((((((((((((((......(((((....)))))..((((...(((...(((......)))...)))...))))......(((((....))))).)))))))))))))))).)).).)))).... (-43.40)