mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCCTCATCATCCTCGTCC AGACGTTCAAGAACAATTAGAGAAGACCAATGCTAGAATGTGGGGCTCACCAGATTTTCCAACTGCATTGGCTAGCTCTGCTAGCGCTTTGGCAGTAACCATATCTTTGTCATCTTCATCATCGTCATCTTCGTCATCATCTTCGTCATCCTCATCATCCTCGTCCTCAGCATCAG 19 0 3' arm Physcomitrella_patens pmrd 100 ppt-MIR414 4e-51 -33.86 .((((...((((.......((((.(((((((((.(((((.(((......))).)))))......))))))((((((...))))))....((((((...........))))))...........))).))))........))))))))............................. (-33.86)