mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTCTGCTGCCTGCCTTTAGGA CTAACAGCAGGAGTAGGAGC TTGGGAGGAGTCCTAACAGCAGGAGTAGGAGCTCTGATTATCCCCTGCTTCTGCTGCCTGCCTTTAGGACCCTTTCCC AAAAATTGGGGGGAAGGGACTGTAGGAGCCAGAGGGGTCAAGGGACTTCCCAAGAAAACCCCACAGAATCAACTAACTTGAGCCCTAAGGAGCTCACAGAAACTGAACTGCCCACCAGGGAGCTTGCATGGGACTGAGCTAGGCCCTCCACACATTGTGGTTGGGAGGAGTCCTAACAGCAGGAGTAGGAGCTCTGATTATCCCCTGCTTCTGCTGCCTGCCTTTAGGACCCTTTCCCCACAACCGGCTGCCTTGCCCAGCCCTAATAGAAGAGGTGCCTTGTCTTACTGTACTTGATATGCCATGGCTGGTTGATAGCCACTGAGGCCTGACCTGGGGAGAACAGGGGAGTGGGGATCTGGGTGTGGGGAGGAAAAGTGGCAGGGAGAGACTATGGAGGGAGGGAAGCTGTGGTTGAGAGGGAAGCTGTGGTTGGGATGTAGAATAAAATTTAAAAATGTTAAAAGTATTGCAAATCCAAGAAAATGAATTGCTTGTAGACTCAAGTGAGCTCTGAAGGTAGAAAAATTAGGGTGGTTATCCTATTTGATTTAAATCTAAGTTCTGTGTCAATGATCTTTTATGACGTAACAGTCCATTCTTAAACTCAATGACTAAAACAACTTC 2 1 3' arm Mus_musculus mirnest 100 mmu-mir-3098 5e-39 -34.5 ..((((((.(((((((..((((((((((((((...((...))....))))))))).)))))..))))))).)))))). (-34.5)