mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACAGTAGTCTGCACATTGGTT CCAGTGTTCAGACTACCTGTTC CAGGAGATCCTGCTCCGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCCGTTGTACAGTAGTCTGCACATTGGTTAGACTGGGCAAGGGCCAGC CAAGACTGGAAATCACAGCCCTTTAGTGTGTCTCAGTCGATGCAGCAGACAGGGTTCAAGGGGGAAGCTGAACAAGCCCCTGGTGCAGGAAGACAGGCTCTCCCCAGCCCCGGGACAGGATTTTCCACACACCGATGGAAGCTTCAGGAGATCCTGCTCCGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCCGTTGTACAGTAGTCTGCACATTGGTTAGACTGGGCAAGGGCCAGCAACGCCATGGACGGCTGGGGACACAATGTGCTGCTTCCAAGGAGAGGACAGCTGGGTGCTCCTTTGTTGAATCTCATATCCAGTGTTTCTCTTCACAGGTTTTGCAAACTAGGGACCAAGAAGCCCTCAGGGACTCTGCCAGGGGAGAGGACTGCTCCAGGGAAGACCAGCGGGTAAGGCCTCTGGGATTGCGTACCTGGTCTGTGATTGGGGAACTAGATAGAGATCCCATCACCTGTGTGAAGACGCTGGAGACACTGAGCTAAGGGACAGATAACCGTGAACTTAACTTTCAAAAGAGCAAGGTCGTATGGTAAATTGTGATTTTCTGTGTGTTTTTTATAAGTCTAAATGTTGATCGTTCAAATGCTTTCTTAAATGTAAGGGTCTTCCGCTTCAAAATAAA 3 1 3' arm Mus_musculus mirnest mir-199 3e-44 mmu-mir-199a-2 5e-52 -38.2 ..((...((.(((((.(((...(((((((.((((((((.(((.(.((......))...).))))))))))).)))))))...))).))))).)).))... (-38.2)