mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGACGGGTCGTGATGGGCACT TGTCCATCACAACCTGCCAAC TGATCAGATACAATCCGGCGGTGGCATTGGGAATGTCCATCACAACCTGCCAACATTCCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCAGCGTCTCATGTCACAAAAACGCAGAC 3 0 3' arm Physcomitrella_patens pmrd 100 ppt-MIR1033a 3e-63 -46.5 ................((((..(((.((((((.((((((((((.(((((.((((((........)))))).))))).)))))))))).)))))).)))...)))).............. (-46.50)