mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTTTGGTTATCTAGCTGTAT AAAGCTAGATAACCGAAAGTA GTGAGGGAAGCGAGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAACTCCTTCAAGGTC TTCACATACAAGATATGTGCAATCAAGCTGCCTGCACTTGGTAAAAAAGATCATGATGCCTAACCCAATGATCCGGAGCAGATCTTTGAATCAGCTGTCACTTCTATAGAATGGGATTTCCCCCTTCTTCCTCTTTAACCAGCGTTGGAAACTGCCGATGGCTTTATACATCTCAGTAGAGGAAGGCTAAAGAATCTTCCGTGAGAATGAAGCAATTTACAATGCAAATAGAGGCCTGTGAAGAGAAGGACACTGCTGCTCACCCCCAACAGCTTGCTGCACCTTAGTCTCTGGTCTTAATTTCTGATACTCATAGATGAATTGTTGGCTAACGATACTGGAGATTACTTGCTGGAAGGGGAAAAGTTTGGAATAAACTCTGAATGCAACAGATCTCATTTGGATGTTCTAGCCGCACACACTAAGACAGAAACCAGGTCATGTTTACATGAAAGGAGAAGCTTAAACGCGGCAAGTACCCCGGAGGACTACGCTTCCCTAAAGCCAAAGAGGATCGAGATCTGGAGTTCAGCCAGAGGAAGGCAGCCTTGTGAGGGAAGCGAGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAACTCCTTCAAGGTCACCGAGGAACGTTCCGGAAAGAAAGACTGCAACCAAGAGACAAGTAAAACCAGAAAGGTCAGGAATGCTTATTGAATCTACTTTTTTTATCTTATGATTGANAGTGGGATGCAAGAAATTAAGTGACACGCATATTGAATCTAAAGGGGCAGGCTTGANGNGCTGTACACTGGAGA 2 0 5' arm Mus_musculus mirnest mir-9 2e-17 rno-mir-3597-2 2e-48 -38.3 ......((((.(((((.((((.(((((((((((((((.((((((..........)))))).))))))))))))))).)))).)))))))))...... (-38.3)