mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGGTTTACCGTCCCACATACA TATGTGGGACGGTAAACCATT GCTGGGCTGGATACCAAGAAGCGGTTTACCGTCCCACATACATACTCAAAATGTATGTGGGACGGTAAACCATTTCTTCAAGTACCGCGTGA CCACGCGTGGCCGCCCGGGCCAAGCAGTGGTAACAACGCAGAGGGATGTTTGGCCAAGCAGCCCGATGTAGAGAGCAAGCCAAAACAACGTTTCTTCTCTCACTTCAGGCTTGCTCGAGGATGGTATGGACTGGATGGCTGGGCTGGATACCAAGAAGCGGTTTACCGTCCCACATACATACTCAAAATGTATGTGGGACGGTAAACCATTTCTTCAAGTACCGCGTGACAGCGAGGACAGCTGTAAGAAGGTTCATGTCTGCCAGGTTGCCTCAGGACACCTCTTCAGGGATGGTGTTGAGAAGAAGCAGGTCATGGAGTCTACTAACCAAGAGTCGCCTAGACACCCCTGTCACTGAGGTCACGAACAGCACTGATCCCAGAAAGCTGTGTGGTCTCCTCCCCAGAGATGGCAAGAGTTCCCGAGGCAGAACTCATCAGAGGAAGGGGGAGATTATGTCATTTCCCATCATGCACGAAAGAACGCACGCCATATTGAAATACCTCTCTTCTAGCCTCCTGGAGAAGCCCTGAATGAGAGTCCACTGGCGTCTTCCCGGAAGACAGCATCTTTCTCCAGGGGCCCCCGGGGATGGCATTTGATATTGAAGGGATATCGGAACCGGCGGCCCATACGCTCCAGTATAAAGCGCCAGCCTCATTACCGGACTACCCATTCTCCCCCCGTTACCCAAACCGCCCATCCCCCAGTACAAAATGCCTGAAAGCCAACTCCCACGAAAACCCCCGCCCGCCCCACTTGAACCCTTGAGGAACACATCTCCGCCGTGGCGTTGGGACACAAAGCGCACCCGACTTCATGGGGCGTATAAGTGTACCAAAGCGCCCCAAGAAGTCTATCCTCCCAACCCCGCGCTACAGGGGAAACACGCAACATC 1 0 5' arm Mus_musculus mirnest mir-299 2e-21 rno-mir-3563 3e-47 -43.6 .....((.((.(((.((((((.(((((((((((((((((((((.......))))))))))))))))))))).))))))...))))))).... (-43.6)