mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGTGATATTGGTCCGGCTCATC TCTTCACTCATGAAGACGAGCCGAATCAATATCACTCT GGTGTGATATTGGTCCGGCTCATCTTCTGTGCATAAGCATCTGAAGTTCTTCACTCATGAAGACGAGCCGAATCAATATCACTCT 4 0 5' arm Populus_trichocarpa pmrd MIR171_2 7e-42 ptc-MIR479 4e-43 -38.8 ((.(((((((((((.((((((..((((.((((....))))..)))).((((((....)))))).)))))).))))))))))).)) (-38.80)