mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGCTCGGTCTGAGGCCCCTCA AGGGGCAGAGAGCGAGACTTT GAAATAAAGGAAGTTAGGCTGAGGGGCAGAGAGCGAGACTTTTCTATTTTCCAAAAGCTCGGTCTGAGGCCCCTCAGTCTTGCTTCCTACCCCG GTCCGCGTCGACCAGGTCCAGCGGAGACGGGAACAAGATGGCGATCCCGGGCAGGCAGTGAGTGATGGGGAAGTTAGGGTCCGGCTGGGGAGTAAGAAGCCAGGGAGACTGAGTCTTTAGGCCGAGGCGTCTGAGGTCGCCGGAAGTGCAGGGCCACCCCCGCCCCGGTTAAAGGCGGGAGAAGGCGAGGAATTCCGAGCCACTTAGGTTCCCCACCCCCCGTCCGGTACATTTTTCCAGGTTGCAAGCCCGAAGTTTGAGAAACTTGTGAGGAAATAAAGGAAGTTAGGCTGAGGGGCAGAGAGCGAGACTTTTCTATTTTCCAAAAGCTCGGTCTGAGGCCCCTCAGTCTTGCTTCCTACCCCGCGCTTGAGTTTCTCCCGGNTT 3 2 3' arm Mus_musculus mirnest mir-423 2e-39 mmu-mir-423 2e-48 -43.2 .......(((((((.((((((((((((..(((.((((.(((((.........))))))))).)))...)))))))))))).)))))))...... (-43.2)