mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGCTGGGGTAGTCTTTAGGG CTGGCAGACTGCCCCAAAGCC CATGCGACTGGCAGACTGCCCCAAAGCCTAGACTGCAGCTACCTTGTATGTGCTTGGGGTTGCTGGGGTAGTCTTTAGGGGAAG AGCACCTTGGGTCCACGAGGGCCTGCCACGGAAGGATCGACCCAGCACAACGCCCTGGGCAGATCTCAGCGCTGCAGCTGCAGGTTGCCCACAGTACGGGTAGCAGGCTTCTGAGTGCCTCGCAAAGTAGCCCTTAGGGTGGGGAGGTGTGCAGCTACCGACAGAGAGGGGTTGTGCAGATGCAAATAGAATCTAGGAAGCAAACAACTCATTCTGTGACAGAAACACGGATCTATGCAAGCGGGGGGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCAGAAAATAGCCTGGGGACGGCTGGAGAGTAAAATGTGCCCCTCAGCTCTGGGACCCTGCCCATTGTAGAAGGCCGACACCTTCATCCCTACCTGTCTTAGTTCCGGATTTCAATTTATTACCCTTAAACAAATAATAATAACCAAGTACCCATGCGACTGGCAGACTGCCCCAAAGCCTAGACTGCAGCTACCTTGTATGTGCTTGGGGTTGCTGGGGTAGTCTTTAGGGGAAGCTGTTTGTCACCCGTTGGTGGAGAGCTGTGGGCATTTGACAAGCTTAAACAGATCTCTGGAGTGAGCGAAGGCGATCGGCAAATTTGTTCATGGACAGCCGCACAGACTCCATCAAAACTGACAGTAGCCCACTGTCTAAAGCAGGGCCTCCCAGCTCCTTGGGGCTGTGGCTGAAGTTTCAGGCAGAAATCCAGAA 3 2 3' arm Mus_musculus mirnest 100 mmu-mir-3078 9e-35 -28.1 ..(((.....)))((((((((((.(((((.((.((((...........)))).)).)))))..))))))))))........... (-28.1)