mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGAAGTGTTTGGGGGAACTC GTTCCTCTGAGCACTTCAAT GTGTCCCCTAGAGTTCCTCTGAGCACTTCAATGGGGATCTTCCATCGACCTGAAAGAGTATTATCATTCCTACTGAAGTGTTTGGGGGAACTCCTGGTGTCAT 2 0 3' arm Populus_trichocarpa pmrd mir-395 4e-50 ptc-MIR395j 4e-53 -44.5 (((.(.((..(((((((((..(((((((((.((((((((((.((......)).)))).........)))))).)))))))))..)))))))))..)).).))) (-44.50)