mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGTACCATTGACTAAAGCTAG AGCTTTGGTGGATGGTCTCTG GGGTAGGTAGCAGGTACCATTGACTAAAGCTAGTANTATAGGCTTGCCTCTAGCTTTGGTGGATGGTCTCTGCTAAGTTCT AAGTGGAAAGGAGCTGAGGCTGCAGNCCGAGCTGGAGCGGCTGCCAGCCGAGGAACAGGCGCGGCTGCGGCGCCATATTGCGGCCCTCACCGGCCGCCACTGAGCCATGGCCGAGACCTACGACTTCCTCTTCACATTCCTGCTGATTGGCCGTGCTGGAACTGGCAAATCATGTCTTCTCCACCAGTTTATTGACAATAAGTGTGAGTTTCTGGCAGGACCCTGGAACTGCGGATGTGGTCATGGTGTGGGTCAGTGGGGCAGCAGGTGGGGTAGGTAGCAGGTACCATTGACTAAAGCTAGTANTATAGGCTTGCCTCTAGCTTTGGTGGATGGTCTCTGCTAAGTTCTCTGGCAACCCAGCAGTGAGAATCGGGGTACAGAAAAGGAGGAAG 2 0 5' arm Mus_musculus mirnest 100 mmu-mir-3101 1e-36 -33.6 (((....(((((((.((((((.(((((((((((......(((....)))))))))))))).)))))).)))))))...))) (-33.6)