mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGCTTTGGTGGATGGTCTCT GTACCATTGACTAAAGCTAGT GGTAGGTAGCAGGTACCATTGACTAAAGCTAGTANTATAGGCTTGCCTCTAGCTTTGGTGGATGGTCTCTGCTAAGTTC AAGTGGAAAGGAGCTGAGGCTGCAGNCCGAGCTGGAGCGGCTGCCAGCCGAGGAACAGGCGCGGCTGCGGCGCCATATTGCGGCCCTCACCGGCCGCCACTGAGCCATGGCCGAGACCTACGACTTCCTCTTCACATTCCTGCTGATTGGCCGTGCTGGAACTGGCAAATCATGTCTTCTCCACCAGTTTATTGACAATAAGTGTGAGTTTCTGGCAGGACCCTGGAACTGCGGATGTGGTCATGGTGTGGGTCAGTGGGGCAGCAGGTGGGGTAGGTAGCAGGTACCATTGACTAAAGCTAGTANTATAGGCTTGCCTCTAGCTTTGGTGGATGGTCTCTGCTAAGTTCTCTGGCAACCCAGCAGTGAGAATCGGGGTACAGAAAAGGAGGAAG 2 0 3' arm Mus_musculus mirnest 100 mmu-mir-3101 2e-35 -32.8 ......(((((((.((((((.(((((((((((......(((....)))))))))))))).)))))).)))))))..... (-32.8)