mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGGGGGTGGCGGGGTTGGGGC TCCGGCTCCGGCACCATGTC GGCGGCTCCGGCTCCGGCTCCGGCACCATGTCCCTGCAGTACGGGGCAGAGGAGACGCCCCTCGCCGGCAGTTACGGCGCGGCGGACTCGTTCCCAAAGGACTTCGGCTACGGCGTGGAGGAGGAGGAAGAGGAGGCTGCAGCCGGGGGTGGCGGGGTTGGGGCGGGGGCCGG CGGCGGCTCCGGCTCCGGCTCCGGCACCATGTCCCTGCAGTACGGGGCAGAGGAGACGCCCCTCGCCGGCAGTTACGGCGCGGCGGACTCGTTCCCAAAGGACTTCGGCTACGGCGTGGAGGAGGAGGAAGAGGAGGCTGCAGCCGGGGGTGGCGGGGTTGGGGCGGGGGCCGGTGGAGGCTGTGGCCCGGGGGGTGCTGACAGCTCCAAGCCGAGGATTCTGCTCATGGGGCTCCGGCGCAGCGGCAAGTCTTCCATCCAGAAGNNNGTNTTTCATAAAATGTCGCCCAATGAGACCCTCTTTTTGGAAAGNACCAACAAGATTTACAAAGATGACATTTCTAATAGCTCCTTTNNGAATTTCNAAATATGGGATTTNNNTGGGCAAATNNACTTTTT 2 1 3' arm Sus_scrofa mirnest 100 100 -80.8 ..(((((((.((((((((((((.((((.((...(((((((..(((((.........)))))((((((((.......)).)))))).(((.((((.......(((((((....)).))))).....)))))))...))))))).))..)))).)))))))))))).))))))). (-80.8)