mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGCGCCGGGCCCGGGTCTTCC AAGACCCACTCCCCGGCGCCGCT TGTGGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGG CTAACCAGGATTCTCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTCTTTTTCCTTTTTTCTAGCGGCCGGGAAGATGGCGGATATTCAGACCGAGCGTGCCTACCAAAAGCAGCCGACCATCTTTCAAAATAAGAAGAGGGTCCTGCTTGGCGAAACTGGCAAGGAGAAGCTCCCGCGATACTACAAGAACATCGGCCTGGGCTTCAAGACACCGAAGGAAGCCATCGAGGGCACCTACATTGACAAGAAATGCCCTTTTACTGGTAACGTCTCCATCCGAGGGCGGATCCTGTCTGGCGTGGTGACCAAGATGAAGATGCAGCGGACCATCGTCATCCGCCGAGACTACCTCCACTACATCCGAAAGTACAACCGCTTTGAGAAGCGCCACAAGAATATGTCCGTGCACCTCTCCCCCTGCTTCAGGGACGTCCAGATCGGCGACATTGTCACAGTGGGCGAGTGTCGGCCCCTGAGCAAGACGGTGCGCTTCAATGTGCTCAAGGTCACCAAGGCTGCTGGCACCAAGAAAGCAGTTCCAGAAGTTCTGAGACTGCACCCCATCCACTGCCC 3 2 3' arm Sus_scrofa mirnest SSU_rRNA_eukarya 4e-69 mmu-mir-5105 4e-35 -61 ..((((....(((((((((....((((((((.(((....(((((((.....((.((.....))((((..(((((....))).))..))))))....))))))))))))))))))...)))))))))....)))). (-61)