mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATTGAATGGTTTAGTGAGGCC TCGAACTTGACTATCTAGAGG CGCTACTACCGATTGAATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAA CGAGACTCTGGCATGCTAACTAGTTACGCGACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTACCCTACGCCGGCAGGCGCGGGCAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACTCCCTCCTCGGACCTTCTCCCCGACCGGCAGCGCGGGAGGGAGGCCGAGATGGCAGATGAGATCGCCAAGGCTCAGGCCGCCCGGCCTGGTGGCGATACGATCTTCGGGAAGATCATTCGCAAGGAAATCCCAGCCAAAATCATTTATGAGGATGACCAGTGTCTTGCTTTCCATGACATTTCCCCTCAAGCACCAACACATTTTCTGGTGATACCCAAGAAACATATATCTCAGATTTCTGCAGCAGAAGATGATGATGAAAGCCTTCTTGGACATTTAATGATTGTTGGCAAGAAATGTGCTGCTGATCTGGGC 5 0 5' arm Sus_scrofa mirnest SSU_rRNA_eukarya 5e-59 100 -53.9 ...((((.((..(((.((((((.(((..((((.((...(((((.((((((((((((.....))))))))))))...)))))...)).))))..))).)))))).))).)).))))... (-53.9)