mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGCTGCCAATTTCTGAATCGGCAGC TGCCGATTTCTGAATCGGCAGTGGCA TCGTTGCCGATTTCTGAATCGGCAGTGGCACAGTTTTTGGCTGCCGATTTTTGAATCGACAGCTATGCAGTTTTTGCTGCCAATTTCTGAATCGGCAGCGG 5 0 3' arm Populus_trichocarpa pmrd 100 100 -47.8 .((((((((((((..((((.(((((..(.((.((...((((((.(((((....))))).)))))).)).))..)..))))).))))..)))))))))))). (-47.80)