mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGGCTGGGCTGGGCTGGGCTG GTCCATGTTCCAGCCTGGCCATC TCTGTCCATGTTCCAGCCTGGCCATCTTCAAGCTGCCGGAGATGAGGCTTCTGGGCTGGGCTGGGCTGGGCTG AAAAAGACACGGGCTTTCAGCAGCAGACACCTCCCATCTCCCCTGCTGACTAGCTGTGTGACCTTGGGCAAGTGACCTCATTTTTCTGAGCCTGTTTCCTCATTTTTCAGTGGTGATGAGACCTACCTCATAGGGTTCGTTGTGCAGGATATAAAATGGAGAAACTGAATGTTAAACACTTAGCACAGTCTCTGAAATGAGTATGCAATAAACGAGAGTATCCACAGACACTTCTCCCCACCGGCCTCCTGGGGCCTCCACCCATAACCTGCCCTCCTCTGATACTGTTTCACGTCTGTGGTGAGCTGATGGACCCAAAACCGTGGACCACTCAACTCTGTTTGCATGCCTGTGCTTATTTTGTGCTCTCCCAACCTGTGACTGTGTGTGTGTCCTTAGAGGCCTGCCGCCTCCCCAGGCCTTTCTGTCCATGTTCCAGCCTGGCCATCTTCAAGCTGCCGGAGATGAGGCTTCTGGGCTGGGCTGGGCTGGGCTG 4 2 3' arm Sus_scrofa mirnest mir-692 0.00006 hsa-mir-3620 0.0002 -33.5 ...(((((...((((((((((((......(((((..((....)).)))))...)))))))))))).))))).. (-33.5)