mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACTTATCATTTTCTCGCCCCG AGGCGAGCAAAAAGATTAGAAT GGAGCAGAGAAAAACAAAATTACTTATCATTTTCTCGCCCCGTACACACCTTGAGGCGAGCAAAAAGATTAGAATAAATTTTAACAATGAGGG CGGAGAACCTTCCCGCCGCCGTGTTCGGACCTCGCCGCTCCAGCCTCCGGGGCCCGTCCCATCCTTCCAGCCCGCGACCGGGAGCAGAGAAAAACAAAATTACTTATCATTTTCTCGCCCCGTACACACCTTGAGGCGAGCAAAAAGATTAGAATAAATTTTAACAATGAGGGAAATCGTGCATATCCAGGCCGGTCAGTGTGGCAACCAGATCGGTGCCAAGTTCTGGGAGGTGATCAGTGATGAACATGGCATCGACCCCACCGGCACCTATCATGGGGACAGCGACCTGCAGCTGGACCGCATCTCCGTGTACTACGATGAAGCCACAGGTGGCAAATATGTTCCTCGTGCTATCTTGGTGGATCTAGAACCCGGGACTATGGACTCTGTTCGCTCAGGTCCTTTCGGTCAGATCTTCAGACCAGACAACTTTGTTTTTGGTCAGTCTGGGGCAGGCAACAACTGGGCCAAGGGCCACTATACAGAAGGGGCTGAGCTGGTTGACTCAGTCCTGGATGTGGTTCGGAAGGAGGCTGAGAGCTGTGACTGCCTTCAGGGCTTCCAGCTGACCCACTCGCTGGGCGGCGGCACAGGCTCTGGAATGGGCACTTTGCTCATCAGCAAGATCCGTGAAGAATATCCCGACCGCATCATGAATACCTTCAGTGTCGTGCCCTCACCCAAAGTGTCTGACACCNGTGGTTGAGCCCTACAACGCCACCCTCTCTGTCCATCAGTTGGTGGAGAACACTGATGAGACCTACTGCATCGACAATGAGGCCCTTTACGACATCTGCTTCCGCACTCTCAAGCTGACCACGCCAACCT 4 1 5' arm Sus_scrofa mirnest 100 100 -14.5 ...............((((((.((.(((.((((((((((.((.........)).)))))).)))).))).))....))))))........... (-14.5)