mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAACTGCATTTTTAACAAGTC CTTATAAAAGTGCAGATTCC AATCACTGGAGTCTTATAAAAGTGCAGATTCCTGGGCATCACCTAGCCTTACGAATTAGAATCTTTGGAAACTGCATTTTTAACAAGTCTCCCCCATC TTTTTTTTTTTTTTTTTTTGCTTTTTTAGGGCCACACTTGCGGCATATGGAAGTTCCCAGGCTAGGGGTCAAATCGGAGCTGCAGCTACCGGCCTACACCACAGCAACTCAGGAGCTGAGCCAAGTCTGCGACCGGATCCCTGACCCACTGAGCAAGGCCAGGGATCGAACCCGCATCCTGATGGATACTAGTCAGATTCGTTTCCACTGTGCCATAATGGGAACTCCCTAGTTCTGGTTTCTTGACAAACAGAACATCAGCCGAGTTTCTGTAAGGAGACTGGGCTAGTCCTTCATAGATCTACTTCCAGCGTTCTGCACCAGGAGCCAGCAAGTCCTGACCCACTTTCCTTGTACAGCTTGTCCATACACCCTTATCCTCACACAGGCTTCATCCTAATGAGCTGTGTGGCCCTGTAGGAGCATAGGTAGGTGATGGAGCCACGCGGGGCTGGTATAGTGCTTTTCAAAACAAAATTACAGACCATCATAATCACTGGAGTCTTATAAAAGTGCAGATTCCTGGGCATCACCTAGCCTTACGAATTAGAATCTTTGGAAACTGCATTTTTAACAAGTCTCCCCCATCACCCCTCCCCCCCCCCGCCGCCCAGTCTTACGCACAGTAAAGTTGAGAACCAGTGGGATAAAAGCTCCCCAGGAGAGAGGCAGGGAGTTGAGAAAAGGCAGGATAAATGATTAGGGATGGATGTGGGGATGGAGAATGCATGGGGGGCGGGTAAAAACATGCTTCGGGGCACTGGC 3 1 3' arm Sus_scrofa mirnest 100 100 -24.5 .......((((.(((.(((((((((((.((((.((((........)))).................)))).)))))))))))..))).))))...... (-24.5)