mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AATCTGCATTTTTAACAAGAT CTTATTAAAATGCAGATTCT TCACCTGGGGATCTTATTAAAATGCAGATTCTGGCTCAGAAGTTTTGGAGTGGGGTCTGAAAATCTGCATTTTTAACAAGATGCCAGGCTG TACGGGGAATGGAAGGAAACGGGTGGGGAGAGGGTCCGAATGGGGAAAGAACAGGAGAGATTTCGGGGAGGGAGAGCTTATTGATGGTTTGCAAGCATGTCTGCGCATTGGAATCACCTGCGGAGCTTTGAAAACTATATCTGGGTTCAACCCCCAGAGATTCTGATGCCCATGCCGTTGGTCTAGCCTCTAGATGGATGCTTCTCATACTTGAATGTGCGTGGGAATCACCTGGGGATCTTATTAAAATGCAGATTCTGGCTCAGAAGTTTTGGAGTGGGGTCTGAAAATCTGCATTTTTAACAAGATGCCAGGCTGTGCTGAGGCCACTGGTCTGTGGATCACGTTTTTTTCTGCAGCAACGGTCTACACTAGAGGTTCCCAAAGGGTGGTCCCCAGCCCATCAGAATCAGTGTCATCTGGGAACTTGAGAGAAAAGCACAATCTCGGGCCCCACCCCAGACCCTCTACATCAGGAATCCTAGGGGTGGAGCCCAGCAGCATCTGTTTTCACCATCCCTCCAGGTGAGTCTCATGCATATGCTGAAGTTGAGGAAACCTGCTGTTGTAGAGAATTCGGGAGGGAAAATAAAAGCCTGAGGGAAGGGTGCCGATAGTCACTGTAAGGACAAATAATGAATT 2 1 3' arm Sus_scrofa mirnest mir-544 0.000000000001 100 -27.4 ...(((((..(((((.(((((((((((((((.(((((...............))))).))..))))))).)))))).))))).)))))... (-27.4)