mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTAGACCCAAGAGCATTGGGTCAT GACCCAAGATGATTGGGTCCTGACGC TCCTGACAAATGACCCAAGATGATTGGGTCCTGACGCAAGACCTAAGAGACCTGGGTCCTAATGCAAGACCCAAATGATTTGGTCTTGACGCTAGACCCAAGAGCATTGGGTCATGACGCAGGA 7 1 3' arm Populus_trichocarpa pmrd 100 100 -57.13 (((((....(((((((((.....(((((((..(.(((((((((.........((((((.........))))))........))))))).)))..))))))).....)))))))))....))))) (-57.13)