mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATGTTGGCAGAGCTCAATCA ATTGAGCCGTGCCAATATCG AATTTGATGTTGGCAGAGCTCAATCAAATCAAAGCACTCAATGGTTGGGTTCTTTCATCTGATTGAGCCGTGCCAATATCGCATT 2 0 5' arm Populus_trichocarpa pmrd MIR171_1 1e-37 ptc-MIR171e 4e-43 -37.8 .....((((((((((..(((((((((.((.((((.(((((.....))))).)))).)).)))))))))..))))))))))..... (-37.80)