mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCAGTTTTCCCAGGAATCCCT GGATTCCTGGAAATACTGTTC CTCTCACCTTGTCCTCACGGTCCAGTTTTCCCAGGAATCCCTTAGATGCTGAGATGGGGATTCCTGGAAATACTGTTCTTGAGGTCATGGCTTACC GCAGGCCACACCCTGTGAGACACGGTGGCCACACCGGCTTCCGCCACGAGGGCTGGATGCAGAAGAAAACTCCGGCTGGTCCTTAGGGACATGGCAGGGCCTTGGGGCCGAAGGCCACTCTCTCACCTTGTCCTCACGGTCCAGTTTTCCCAGGAATCCCTTAGATGCTGAGATGGGGATTCCTGGAAATACTGTTCTTGAGGTCATGGCTTACCAGCTGGATGTGCCTCCTTCCCAGCCCAGGGCGGTCCCCACGCAGCTTCGGCTCGAGCGCAGCAGCAGGTCAAGTGGAAGGCCACGCGCTGGAGGTAAGAGGCCGGGGACTGTGTTTCTGACCTTTACGTTGCTTTTCTTTCCATTCCATCCATTTCGTAACATCCTGTGAGACTGGAATGGGAACTTCAAAACTGTCCTGCTCTTGGGAAATCTGTCCAGGCGCTCAGCTGAGCAGCGGCTGCACCAGGACACCATAAGGCACGTGTTCTCTCCGCCGCCCCCTCGCCGGCCCCACACGACTTCCCAGCATGCCAAGCGGTAGGGGCCACGGTATCAAATCAGCATTACTGACAAATGAATACATGTGCCTAAATCCACTTAAAAAGCTTTACTATGTTAGTTAGGTAAACTAAAAAACATAAGTTTTAGTTCAATTTGGAATGGAGACATAGAAAGATTAAAAACCTGTCCGTGAAGATAAAAACAAAAAAGCTCACAGTGCCCTCTTGTGGTGGCACCTGCTTCCACCCCCTCCAGGAGCACGGCTCTGCAGACACACACGCAGCGAGATTCCTTTGGCCCCAGTCGCTTTTGAGCCAGTGACCACTGGAGCCCTGCCCACTCCTCATGAGCTCTGATGCCTCCATCACTCTCAACTT 3 0 5' arm Sus_scrofa mirnest mir-145 3e-35 ssc-mir-145 1e-43 -35.5 ......((.((.(((((.((..((((.((.((((((((((((.............)))))))))))).)).)))).)).))))).)).))...... (-35.5)