mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTACTCCCTCCGTCCCTATTT TTAGGGACGGAGGGAGTACCA CCAACTTCTAGTCTGAATTTCTTGTTGACTTCTACTCCCTCCGTCCCTATTTACTTGTCATCCTAGCCTCCTCCAAATTTCTCAATTTACTTGTCATCCTCGCATCCCAATGCACCTTTTTACTTTTCCAATACATCTCTATCTCTATCTCTCTCCTCCTCGTTTTCAGCGCATCCACCTTTTTCACCTTCTCTTAATCTCCGTGCCCAACTCTAAAACGACAAGTAATTAGGGACGGAGGGAGTACCATTTTGTTTGTCCACGAACTCAGTTCAAG CGGGCACATCCTCTTCATAGCATCACGCTCATACTCGTGCTGCTCATGACCCTCGTCTCCATGAGCTCCAAGGTAAAGTGACATGATTTCACAATGGATATCCCAACTTCTAGTCTGAATTTCTTGTTGACTTCTACTCCCTCCGTCCCTATTTACTTGTCATCCTAGCCTCCTCCAAATTTCTCAATTTACTTGTCATCCTCGCATCCCAATGCACCTTTTTACTTTTCCAATACATCTCTATCTCTATCTCTCTCCTCCTCGTTTTCAGCGCATCCACCTTTTTCACCTTCTCTTAATCTCCGTGCCCAACTCTAAAACGACAAGTAATTAGGGACGGAGGGAGTACCATTTTGTTTGTCCACGAACTCAGTTCAAGGCAGGGTATTTGGCACCAGGGCTGATGGGGGTGTACGTTGTGTTTCTGTGCTGGTCGGCGATTAGAAGTGAGCCGCACACCGAGAGTTGCAACAGGAAAGCTGAGGTGGCACCAAGTGCAGATTGGCTCAACATCGCGAGTTTTGTTATTGCGGTAATCGTCATCGTCGCGGCTACCTTCTCGACAGGAATAGACTCCAAGTGCTTGCAGTTCAAGAAGGCCGAGTCGGAGGAGGAGGACGACGACATACCCTACGGCTTCGGCTTCTTCCACTTCGTGTTCGCCATGGGCGCCATGTACTTCGCCATGATCTTCGTCG 2 0 5' arm Cynodon_dactylon mirnest MIR1122 0.0003 tae-MIR1136 0.0009 -47.194 .........((((.((...)).....))))..(((((((((((((((((.(((((((((................................................................................................................................................................))))))))).))))))))))))))))).................((((...))))... (-47.194)