mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGGGAACGTCGAGACTGGAGC ACCCGTCCCGTGCGTCCCCGGA CGCCAGGCGCACCCGTCCCGTGCGTCCCCGGACGTTGCTCTCTGCCCCGGGAACGTCGAGACTGGAGCGCCCGAG AGCCCCGGCCGCCAGGCGCACCCGTCCCGTGCGTCCCCGGACGTTGCTCTCTGCCCCGGGAACGTCGAGACTGGAGCGCCCGAGCCGAGCCACCTTCGCCGACCCGGAGCGCTGCGGCTCGACTCACCGCGGAGGCGCTCGGACGCGAGAAGCGATTTCTGCTGCCTGGGGCCGTGGCGGTGGGGGCTGCGGAGCCCAGGAGCTTCCCACCCAGAGGAAAGGCAGCCTCACCCTCACTCTTCTCAGCGCGGACACGCCGCCCTCACCGCCGTGGGTGAGGGTCCTCAGGCTACACCCCACGGCTTGGAATTCCACAACATTGGACGAGGCACTCAGGACGGCCTGGCTCCCACAGACCCCTGTGCAGGAGGGACCACCTTGCAGGAGGGCCTCCTGGCATTTCAGGGAGAAGAAGGGGTAACTAGGATACCTGTTAAAGAGTGTCGGAGAGCGACAGGTGGGTCCTGGCTGTGCCCTGGGCCAGCCTCCTAGGGACCTGGTTCCCTGGGCCTCTGCTTGCCTTGGCTACTGACTGTCTTTCCGACCCCTCCACTGGCTTCTTGATACTCGGGACAACTCCAGGCACAGTCCTGCCTCTGAGCCTCCGCTCGTGGTGTTCCCTCTGCCCTTCTCCCTCACCTGGTGACTGTTACTTCTTCTGCTCCTCTGCCTTCACCTTGGCCTGGGTGCAGCGGCCGGTCCCGCCAGGGAGCAGAGCCCTCCTTCCGGCCGCCTGTGCCCTCTCGCGTCCT 4 1 3' arm Sus_scrofa mirnest 100 mmu-mir-1247 7e-32 -29.5 .....(((((.((.(((.((.((((.(((((.....((.....)).))))).)))))).))).)).))))).... (-29.5)