mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACCCGTCCCGTGCGTCCCCGG GGGAACGTCGAGACTGGAGC CCGCCAGGCGCACCCGTCCCGTGCGTCCCCGGACGTTGCTCTCTGCCCCGGGAACGTCGAGACTGGAGCGCCCGAGC AGCCCCGGCCGCCAGGCGCACCCGTCCCGTGCGTCCCCGGACGTTGCTCTCTGCCCCGGGAACGTCGAGACTGGAGCGCCCGAGCCGAGCCACCTTCGCCGACCCGGAGCGCTGCGGCTCGACTCACCGCGGAGGCGCTCGGACGCGAGAAGCGATTTCTGCTGCCTGGGGCCGTGGCGGTGGGGGCTGCGGAGCCCAGGAGCTTCCCACCCAGAGGAAAGGCAGCCTCACCCTCACTCTTCTCAGCGCGGACACGCCGCCCTCACCGCCGTGGGTGAGGGTCCTCAGGCTACACCCCACGGCTTGGAATTCCACAACATTGGACGAGGCACTCAGGACGGCCTGGCTCCCACAGACCCCTGTGCAGGAGGGACCACCTTGCAGGAGGGCCTCCTGGCATTTCAGGGAGAAGAAGGGGTAACTAGGATACCTGTTAAAGAGTGTCGGAGAGCGACAGGTGGGTCCTGGCTGTGCCCTGGGCCAGCCTCCTAGGGACCTGGTTCCCTGGGCCTCTGCTTGCCTTGGCTACTGACTGTCTTTCCGACCCCTCCACTGGCTTCTTGATACTCGGGACAACTCCAGGCACAGTCCTGCCTCTGAGCCTCCGCTCGTGGTGTTCCCTCTGCCCTTCTCCCTCACCTGGTGACTGTTACTTCTTCTGCTCCTCTGCCTTCACCTTGGCCTGGGTGCAGCGGCCGGTCCCGCCAGGGAGCAGAGCCCTCCTTCCGGCCGCCTGTGCCCTCTCGCGTCCT 4 1 5' arm Sus_scrofa mirnest 100 mmu-mir-1247 2e-32 -29.6 ..((..(((((.((.(((.((.((((.(((((.....((.....)).))))).)))))).))).)).)))))...)) (-29.6)