mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAAACACTTCTGCACAAAC GTGTGCGGAAATGCTTCTGCT TATGAATCTAGTGGAAACACTTCTGCACAAACTAGATTCTGGATACCAGTGTGCGGAAATGCTTCTGCTACA TACACCACTGGTCATGGCAATGCCAGATCCTTAACCCACTGAGTGGGGCCAGGATTGAACCCATGTCTTCATGGATACCAGTTGGGTTCGTTAATCGCTGAGCCATGATGGGGAATCCCAGACACAATTTTGAGCTTATAATTCACATAAAACCATAGGACATTTCAAAATCTAGAACCTGAGGTACTTTAATGCTAAGCGAATGTGGGGTAAATGTGTATGACCTCTCTCTCTGATCTTCTAACACACAGGAACCAAAGGCTTTTTAAAGAGAGAGGGATAGAAACCAGCCTGTATGACTGTTTTAGAAGGGAAGAGGTGATTCTTTGACTGCAAATGTTATGGTGATACTTTTTCCAAAGGGGACTGAGTACAAATCCCAAAAGGGGACATGAGGGTGAAGGACAGATCTTAACAAAACATTTTCATTTGCTGCTTCTTTTTTTTAAAGCTTATAACAATCAACCAAGAATGGAAGCCCATTGAAGAGTTGCAGAATGTCCGAAGGGCAACCAGATGACCAGTCCTCGCCTTTTTCTTCAAAGAGCACTCTATGAATCTAGTGGAAACACTTCTGCACAAACTAGATTCTGGATACCAGTGTGCGGAAATGCTTCTGCTACA 5 0 5' arm Sus_scrofa mirnest mir-147 3e-22 cfa-mir-147 3e-28 -23.3 ........((((((((.((.(((((((((.........((((...))))))))))))).)).)))))))).. (-23.3)