mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTCTTGGGGCCCGCACTCTCG GGGGAGTGGTCCCCGGGGGGG GGCATCGGTGCTGGGGAGTGGTCCCCGGGGGGGGCCACCACTCCGGCCTCTCTTGGGGCCCGCACTCTCGCTCCGGGCC GCGGCAGAGGGCGCAGGCGGCTCGGCTAATCCGGCGGGTCGACTGTCGGGCCGTCCCGCTCGGACCCCGGCCCTAGGTCTGGCCCCGAGATGGGAGCTGCTCCCTGGGGGCTGAGCTTGTCAGCATCCTGGATTGGCCCTCGCCCCTGAAGTCAAGAGAAGAGTCCCTGCGCACCCACACCTCTCTAGCTCCCTTTTGGGGTCGCTTCAGTCTGTCGGGTCTTCAGCCCTAGTGGCTGCGCAGTCCGACAAAGGAGCAGAACGATGATGCTGGCATCGGTGCTGGGGAGTGGTCCCCGGGGGGGGCCACCACTCCGGCCTCTCTTGGGGCCCGCACTCTCGCTCCGGGCCCTCTCCACATCAGCCACCGATACCCACCACGTGGAGATGGCGCGGGAGCGCTCCAAGACCGTCACCTCCTTTTACAACCAGTCGGCCATCGACGCAGCAGCGGAGAAGCCCTCAGTCCGCCTCACTCCGACCATGATGCTCTATTCAGGACGCTCTCAGGATGGCAGCCACCTGCTGAAAAGTGCTCGGTACTTGCAGCAAGAATTGCCCGTGAGGATTGCTCACCGCATCAAGGACTTCCGCAGCCTTCCTTTCATCATTGGCTGCAACCCCACTATACTGCACGTGCACGAACTGTACATCCGTGCCTTCCAGAAGCTGACAGACTTCCCTCCGATCAAGGACCAGGCGGATGAGGCCCAGTACTGCCAGCTGGTGCGACAGCTGTTGGACGACCACAAGGATGTGGTGACCCTCTTGGCTGAGGGCCTGCGTGAGAGCCGGAAGCACATAGAGGACGAGAAGCTGGTCCGCTCCTTCTTAGACAAGACGCTGACTTCGAGGCTCGGGATCCGCATGTTGGCCACACACCATCTGGCTCTAC 3 0 3' arm Sus_scrofa mirnest 100 bta-mir-1343 0.00000001 -47.1 (((.((((.((.((((.((((.((((((((((((((........)))))))))))))).)))).)))).)).))))))) (-47.1)