mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGACAGCACGACACTGCCTTC AGGTAGTTTCCTGTTGTTGGG CATCAGAACTGGTCGGTGATTTAGGTAGTTTCCTGTTGTTGGGATCCACCTTTCTCTCGACAGCACGACACTGCCTTCATTACTTCAGTTGAAATCG AGACAGGGAGCCGGGCTCCGTGCCGTCCCCGGCGCTTTCGAATCGCCCAGGGCTGCCGCCGCTCGGCGCCGCGCCGGCTCGCTGGGCTGCAAGATTTGGGAAAGCAGCACGCGCCCTGCCGGCTCTCTCCGCTCTTCTCGCTTTCTCCCCTCCTTCCATTTCCCTCTCGCTCTCCTTTACCTTCCTCCTCCCTCTCCCAGGTTTACCTTCCTGAGGCCAGTGGCTTTTTTCTCTGACATGCCTTAGCGGCAGCCCGGGACACACAGTGGCAGTGGCGGGCACAGGTTGGCGAGGGGCCGGGCGCGATCGCAGGGTTCTCCCTTGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCGGAGGGCGAGGCAGATTCGCGCGGGCAGCATCAGAACTGGTCGGTGATTTAGGTAGTTTCCTGTTGTTGGGATCCACCTTTCTCTCGACAGCACGACACTGCCTTCATTACTTCAGTTGAAATCGTCTCCAGGAGCCTCGACCCTGCCTCGTTCTCAGCTCTCTGCCAGACTGCTGGCCTCACCCCCCATCTCCACCTGGCCAGGAGCAGGTAACCCGGCTGCCAACTGGCTCCACGCTCGCTCCACACGGAAGAAGCGCTGCCCGTATACAAAGCACCAAACACTGGAACTGGAGAAAGAATTCCTGTTCAACATGTACCTCACCAGGGACCGTAGGTACGAGGTGGCCCGATTGCTCAACCTCACCGAGAGGCAGGTCAAGATCTGGTTCCAGAACCGCAGGATGAAAATGAAGAAAATCAACAA 4 0 3' arm Sus_scrofa mirnest mir-196 2e-39 mmu-mir-196b 5e-43 -34.6 ..(((..(((((..((((((..(((((((.((.(((((((((((..........))))))))))).)).)))))))..))))))))))))))..... (-34.6)