mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGGCTCGGCTCGGCTCACCTG GCTGAGCTCAGCCCAGCCGTC CCGTCACTCCTCAGGGAGCTTTGCTGAGCTCAGCCCAGCCGTCCAGGCACCAGCAGTCGGGCCCGAAGGTCAGTGCGGTGGGCATTTGCTTCCGCCCGGCTCGGCTCGGCTCACCTGAGCCCCACAGAATGTAACC ATCACCGCACACCGAGGCTGCCTTCGGGAAGCCTCAGGCGGTCCCCTGTCCCTCTGCACCGTCACTCCTCAGGGAGCTTTGCTGAGCTCAGCCCAGCCGTCCAGGCACCAGCAGTCGGGCCCGAAGGTCAGTGCGGTGGGCATTTGCTTCCGCCCGGCTCGGCTCGGCTCACCTGAGCCCCACAGAATGTAACCAGAAGGAGCAATGACTGATTTTACACCAGTGGGTGTGGGGGCCGTCGGGAGGTTTAATGAGCTGAGACCCCTGCCAGGCAGCCCCCAGAAGTGGCTCACTGCCCCCCGGGATACACGAGGCTCCGAGAAGTCGAGGCACTGGCCACGCGCAGACCCACCTGTGGGTTTGGACCTGCCTGACTCTGTCCCGTGCCCCGGCCGCTATCCTGGTTTCCTCCCTCTGCACCAAAAAGATTACTGGAGAGACCGGCCACTCAGAAGTGGGCAGAGCCAAGGCAACACGGCTTTGCTTACCCCCGGGGGTCCGAGAGAGTGTGGATCCGACTTCGCAGACGTTCAAGTCCCCGCTTTGCCGTGGGACTGCAGGTGACCAGCCTCTTCCAGCACCCAGGTCCCCTCCCGCAGACACGACGCCGTGCGCCCCTTGTCCTCCTGCATCTGGCGTCCCGGACTCCACAAAACCGGGACTGGAAACTCGCACCGAGACCCGAAACAGGCAGCTCTGCTCAGAGAAAACGCTCTTCCAGACGGAGAGGCCGGGCCTTTTGCCCGAGAGGTGGCGAGCAGTGCAAACACCTGGTTACACAGAAGAGCAGTCAGAACGGGGGCCACACCTGCACCTTCTGAACCTGCACCTTCGCACG 5 0 3' arm Sus_scrofa mirnest 100 100 -50.1 ..((.((..((..(((.((((...((((((.((((.(((((....(((...(((((....(((((...((....))..)))))..)))))...)))))))).)))).))))))...)))))))..))...)).)). (-50.1)