mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTCAATCTCCCCCAAAGGCA CCTCTGAGGGAGATTGGGAG GGAGTAAGCTCTCAATCTCCCCCAAAGGCATCCAACATTCTCGTTATTTGAAGCAATTACTATAAACTGAGATATTGGAAGCCTCTGAGGGAGATTGGGAGCTTCTCC 3 0 5' arm Populus_trichocarpa pmrd MIR477 1e-50 ptc-MIR477a 5e-43 -56.2 ((((.((((((((((((((((.((.((((.(((((...((((.((((...((....))...))))...))))..))))).)))).)).)))))))))))))))))))) (-56.20)