mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTAAGACTGATAATAGCAAA TGCTGTTTGAAAATCTTAGGCA TGACCAAAAGGAAAAGAAAATAAAGAAGAACTCTGGAGTGGTCTAAGACTGATAATAGCAAAGTACATCAAGCACAGAGAAACATATTACTGTGAACTTTTGCTGTTTGAAAATCTTAGGCATTCTTAAGTACTAGTTAGACCAACTGTTTTTTTTCCAA AACAAAAAAGAACCAAAAAAGTCACCCTATCAGTTTTTAAATGGATGTGTCGCTGGTCTTTTCTGAAATTTCCCTTGCCCACGTTTACATGGGAAAAGTAAGATTAACTCTCTCACGGTGGTCACCCATGCAAGAATCATGTCTGGACATAAATACTAGCTCGTAAAGGCAAGCAGTTGTGAGGCGCAGGGGGCAGCAGCAAGTCACATATCTCTACTCTTTGACCAAAAGGAAAAGAAAATAAAGAAGAACTCTGGAGTGGTCTAAGACTGATAATAGCAAAGTACATCAAGCACAGAGAAACATATTACTGTGAACTTTTGCTGTTTGAAAATCTTAGGCATTCTTAAGTACTAGTTAGACCAACTGTTTTTTTTCCAACCCAAGACTTGTAACACATATAGACAGCAGGAATTCTTATTTCTATAATAAAGTAACAAGATTCACCTAACTTGTGAAAATAAAGTAGTACTGAAGATTTAAAAAAAAAAAAAAAAAAAAAACTCGAGGATCCGGGTACCGGGCCCATAAGGCCCTATAGTGAGTCGTATTA 5 1 5' arm Sus_scrofa mirnest 100 100 -34.1 .........((((((((((.(((...((.(((..((((((.(((((((.....((((((((((.........(((((.((......)).)))))...))))))))))......)))))))))))))..))).))..))).........)))))))))).. (-34.1)