mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATACATACACACACATATAT ATACGTGTGTGTATATATACG AAGTGCCATTTTCATCACAAGAGTTCTACCATATACGTGTGTGTATATATACGTATACATACACACACATATATATTTTGTTTTGATCAGTTGGTTTTGAAGT TTTTTGACACTGGTTCATAGATCGGCACCTGACTTTGAACCTGGCACCAAAAGGCACAATATCTGATACCCTGTACAAGAGCTACTAGAGATGCTGCCGTATGGATGGGCAAAACTGAGCCAATCCCACTTATGAATGGAAGGCTTGAACAGGGAGTTGGCAAAGAGAAAAACCTAAGCCCATTTTTTTTTTTTTTTGCTAGAATGTAAATGAAAGTGGAAATATTAAGGTCTTGTTTTTTTTTAATCCTCCAAATACCAGGAAGCAATTTAAAATCTTCCTTGGTGCTTTTGAAAGCAGCATATTCAAAATGCCAGCAAAAACTCCTAATAACTGCAAAACCAAAAGGGGATCAAAGCTCACCAACATCCCTCCTTATTGCTGAAAGATTCTAAAACCAAAATTCAGGGCGCCCTGTTCCCTTGTAAAAGGGAAAATAAGTCTGATTTATTGTTATCATAGTACATCACACTTTTAAAAAAATATTAAAGCGTGTGACCAGGGGAATGCTTTGACACCATTTTATTAATCTTCAACTTCAGTGGAAAAATATAACCTTTTTCAAGTGCCATTTTCATCACAAGAGTTCTACCATATACGTGTGTGTATATATACGTATACATACACACACATATATATTTTGTTTTGATCAGTTGGTTTTGAAGTGCAGCAAGAGACCAATACCGCATTTATAGTAATCAAATAAAAGAGAACAGAAGGCCAAGCAGTTTCCAAATGGTTATTTTATCAGATTGTTTAAACATTAAATTTATCCTTGTTTGCAATCCAAAATAGTTACCTGAAGTTTGCTGTTTACTTTTATTGTATGTTTCCTAAACTCTTTGGCACAATTTTCTGGGGGCGTTCAGACTGCCACCATACATGTCAAGAGAGAACTTTTCTTTTGTGCTGCCAATTCTGAGCATTTAAATTTTGGTTTGTTTGGGTTGTGGCTTTCTTTTGTTTTTTGTTTTTTTTTGAAGTTTGCATTCTTTATTTGTAACAATTGTATTTTTATGTTTTTCTATATCCTCTAACTCCAGAGTTTTTTTTCTCCCCCCTCCCCCCACTTCTACATTCACAGTTGAACCATATTATTAGGAAAGGCGCCTTGATAAAAAGATCAGGATGGGAGCTCTGACCATTCGTCAGTGTTTTCCCTAGAAGTGGGGGGGGGAAGAAAAGAAAAGAAAAAACCCAAAACAAAACCTAAAGAGCGTCTTTCCTTTTTTTTTCCTTACATCTCTTGGGCTGCATC 3 0 3' arm Sus_scrofa mirnest 100 100 -24.9 ....((((...(((..((((((........(((((.((((((((((.(((....))).)))))))))).))))).))))))..))).....))))........ (-24.9)