mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAACGCCATTATCACACTAAA GAGTGTGACAATGGTGTTTGT GATCTTCCTTAGCAGAGCTGTGGAGTGTGACAATGGTGTTTGTGTCCAAACTATCAAACGCCATTATCACACTAAATAGCTACTGTTAGGCAATC GGCCTACTGGACAAGCTCGAGGCTTGGCCCACACAGCCTGCAGAACTAGGGAGCGCGGAAGACACCATCTCACGGACACAGAAGGGGCCCTGGGCCCAGAGAAGACCTTCGCATACTGCAAGAGTAATGAAAGCCTGAAGCATCCAGGGCCCCCCTGGAGCAGCAGAGGGGAGCTCAGACGCCGCGATGAGATTCTGGGAAGTGAAATGGGCTCAAGATCTCGACCACTAGAGAGCTCTCCAAGGATGCCCTACCAGGACCTTTGTCACTGGTGAACTGTTTCCTCCCCAAGATTCTTTCCAGCTGAGCTAAGAGATTTCTGGAGCCTCTCGCCATGGTCTCTCTGTGGAGCTGGCGAGGTTCTCTGATGATGTTCAGTGGCTATGGTGGAATGTGCAGGTGAAAGTAACACTTTCACGGCTACAGATCTTCCTTAGCAGAGCTGTGGAGTGTGACAATGGTGTTTGTGTCCAAACTATCAAACGCCATTATCACACTAAATAGCTACTGTTAGGCAATCCTTCCGCTCACTAAATGCCTTGGCATCTGTTTGGTATGGGCAAGAAGGTTCATCTTATAGCAGTGCTCCTGGTCCTGGGT 3 0 3' arm Sus_scrofa mirnest mir-122 6e-24 bta-mir-122 5e-43 -40.8 ....((.((((((((((((((..(((((((.(((((((((((.((....))...))))))))))).)))))))..)))))).)))))))).)).. (-40.8)