mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGTGTGCAGGGCACTGGGAG GGCCCAGGCTTTTCATGCCGCG TTTTTCTCTCTGATGGGGAGCAGGCCCAGGCTTTTCATGCCGCGACTAAAGGCCGCTGAGCCGCTGGAATAGCAGCAGGGCTGGAGGTGTGCAGGGCACTGGGAGCTAACGGAAGGAAGGGTCT TTTTTTTTTTTTTTTTCATTTAAATCACCACATCACAAAAGGCAGCTATTTTGAAAGACTAAAAATGTCACTTGGACATAAGGGGGGTGGGGGCACAGAGAAATGAGAACACAATGGTTGGAGAGGGAGGAGCTGTAAATACAGCCACCTACACGCCACATATCTCGGAGGAGCAGGCTCCCGCGCACAGGGGCTTCATAACACCAGACGGTCTATTTGTTCACAATATTAAAGGGCATCTAGAATTAGCTACAGTGAGGGATCCAAAGTTGCCTGGAGAATGGGCACAGAAAGGCTGCGTCCGAAGGTGGCCTGTCACTTGGGAGGGTGCAGCTGCCGGGCCTTCCTGTTGACCGCTGTCTTGCAAAACTAGAAGAGAAATACAATTATTAAGGAAGCAAACAGAGAAAAACAAAAGCACACTGTAAATCATCGATTGGGGGATTTTCAAAAGCAGGAAGGATGCCAGGCGGGGGCGGGGGGAGATCCAGGCCGTGACTGGGAAGCTGGCAGGGCAACAATCCACTCCATCCCCCCCTCTTATCTCCCAGAAGTCCTCCTCAGGCCTGCGGGGCAGAGCACACGGAGGGAGGCTCACCTCACCGCTGGGGAGACCCCGGCCTCCTTCGCACCTTAGTACTAGAGCACGGCCAGTGTTTCTTTGGTGACATACTTTTTCTCTCTGATGGGGAGCAGGCCCAGGCTTTTCATGCCGCGACTAAAGGCCGCTGAGCCGCTGGAATAGCAGCAGGGCTGGAGGTGTGCAGGGCACTGGGAGCTAACGGAAGGAAGGGTCTTGGGAAAGAGTGACAATGTGAAACCAGAGACATCCCATCCTGGTCCTATACCAGGGCTGAAATACTCCAAGTATCTGAAAGATGCTGCCTCTGATGAGGGCAGCTACTTGGTCTGGGATCAGAGGGTAGAGCAAGGAGGGCAATGAAGCACCAGACCCAGAAGGAACACTATGAAAAGCAGTCTGGCCAGTGAATTTTCTAAGGGAGGGGCATGGAATGGCTCATGCACATGGCGTGCAATGGGCACCCAGAATGCCAGCTTCAACTGGAAATGGCTCAAGTTACA 3 1 3' arm Sus_scrofa mirnest 100 100 -40.7 .((((((.((((......(((...((((((((((.((((((.........((((.(((....((((...))))..)))))))...)))))).))))).))))).)))..)))).)))))).... (-40.7)